PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp5g01730
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family WRKY
Protein Properties Length: 286aa    MW: 32927.3 Da    PI: 8.1937
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp5g01730genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.63.4e-25101162159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                ldDgy+WrKYGqK+++gs++pr+YYrCt++   gC + k+v++s+++p + e++Y ++H+++
  Tp5g01730 101 LDDGYCWRKYGQKDINGSKNPRGYYRCTHRftrGCLAVKQVQKSDTNPLCYEVKYVESHTCN 162
                59***************************9999***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2488162IPR003657WRKY domain
SuperFamilySSF1182907.45E-2396163IPR003657WRKY domain
PROSITE profilePS5081121.79296164IPR003657WRKY domain
SMARTSM007741.8E-32101163IPR003657WRKY domain
PfamPF031061.8E-21102161IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MLMEEKRVIK ELEQGKELVN QLMNNLKNPS SSSKYSNKTL ISKILRSHEN TIAMMSLDKE  60
TLKRSPERVD QSQRKRRMLE KKKTTEKVKI CVGTGQEVTS LDDGYCWRKY GQKDINGSKN  120
PRGYYRCTHR FTRGCLAVKQ VQKSDTNPLC YEVKYVESHT CNITPSTTKY SVSVSEEERN  180
RGSKLHDAKQ SEETIKHMKS EELMLSLEDM DYKKEIFRTF SFSNLETDNC YEWTNLMETL  240
SPTASESGIT KELLSTSVSI ANSPTDDSCF SSLENILVST HDLSWM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964ETLKRS
27277QRKRRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013690572.11e-150PREDICTED: probable WRKY transcription factor 46 isoform X2
RefseqXP_013690571.11e-150PREDICTED: probable WRKY transcription factor 46 isoform X1
RefseqXP_013634303.11e-150PREDICTED: probable WRKY transcription factor 46 isoform X1
SwissprotQ9SKD96e-99WRK46_ARATH; Probable WRKY transcription factor 46
TrEMBLA0A078I2Y51e-149A0A078I2Y5_BRANA; BnaC04g21660D protein
TrEMBLA0A0D3BWF61e-144A0A0D3BWF6_BRAOL; Uncharacterized protein
STRINGBra014426.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48882352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.12e-87WRKY DNA-binding protein 46